About the course
Course offered by Prof. Nassir Navab
Team: Javier Esteban, Ardit Ramadani, Zhongliang Jiang and Farid Azampour (Contact the course tutors)
Type: Praktikum (IN2106, IN4136)
SWS: 6
ECTS: 10 Credits
Table of contents
Announcements
Final presentations order (as of 05.01.2021): Zoom links have been provided by email, as well as instructions on how to upload the presentations slides. The order of presentations is explained in the email and is also noted down in the schedule.
New Latex template for slides (as of 08.12.2020): New template for Latex presentations in Downloads section.
Intermediate presentations order (as of 08.12.2020): Zoom links have been provided by email, as well as instructions on how to upload the presentations slides. The order of presentations is explained in the email and is also noted down in the schedule.
Requirements presentations order (as of 15.11.2020): Zoom link has been provided by email, as well as instructions on uploading the presentation's slides. The order of presentations is based on the project id, so we will start from project id 01 until project id 21 in chronological order. There is only two exception due to schedule conflicts, project number 19 and 12 will start first and we continue from 01 as third in the line.
Schedule update (as of 11.11.2020): On Monday the 23rd of November, the lecture "Documentation, Tests, Design Patterns & Integration Strategy" has been rescheduled to start from 09:00AM. Due to problems with TUMOnline, the lecture schedule will not be able to be updated there.
Project assignment (as of 06.11.2020): The project assignment has been complete. Please check the projects below to find out which project has been assigned to you. We have tried really hard to fulfill everyone's preferences, hope everyone is happy with the assigned project. You are advised to contact your supervisor as soon as possible to introduce yourself and appoint a meeting to kick-off the project. Good luck!
Choice | Number of students | Percentage |
---|---|---|
1st choice assigned | 10 students | 50% |
2nd choice assigned | 7 students | 35% |
3rd choice assigned | 2 students | 10% |
no submission | 1 student | 5% |
Tab. Percentage of assigned projects based on student's preferences
Project Number | Selected by |
---|---|
17 | 7 students |
19 | 7 students |
1 | 5 students |
5 | 5 students |
18 | 4 students |
Tab. Top favorite projects (based on student's preferences)
Project announcements (as of 03.11.2020): Projects have been announced. Read through all of them and choose three favorite for which you write a short motivation and send it by Thursday (05.11.2020) midnight. The form to apply is Student project application template. We will assign projects once everyone has submitted their choices, we will try use the combination that maximizes the number of first choices. Good luck!
Project announcements (as of 02.11.2020): Only the students that have proposed their own project have been assigned on the table below (those projects are reserved to those students and cannot be chosen from other students). We will update the table with the PDF-s of all projects until tonight.
Zoom meetings (as of 02.11.2020): Please use your full name as your Zoom account, since it is really hard to match when we are taking absences.
De-registration deadline (as of 14.10.2020): Friday, 30.10.2020, 23:59 Munich Time zone. All students who want to deregister the course without getting booked with a grade, please make sure to send the course tutors an email for deregistration before the deadline.
Preliminary Schedule (as of 14.10.2020): A Preliminary schedule has been published for details on when the lectures and student presentations are going to take place. Your presence is mandatory in all student presentation sessions (even if you are not going to present). Lecture sessions are optional beside Lecture 1. Absences are recorded for all sessions, make sure to inform the tutors of the course with a valid reason in advance if you cannot make it in one session.
Updates due to CoViD-19: All lectures and student presentations, until any further notice, are scheduled to be held online through Zoom. Make sure to have Zoom installed and ready for the First session. The details for joining the lecture and presentation sessions, students will be informed through email in timely manner at least one day before the session. Please also follow course's web-site and TUMOnline for any further announcements.
Schedule
For lecture sessions, presentation sessions and changes in the schedule, please also refer to TUMOnline.
Date | Time | Place | Topic | Conducted by | Materials |
---|---|---|---|---|---|
Friday, 17.07.2020 | 13:00 - 14:00 | Zoom | Preliminary meeting ("Vorbesprechung") | Course tutors | |
Monday, 02.11.2020 | 10:30 - 12:00 | Zoom | Lecture 1: Introduction and Project Announcement | Course tutors | L00_PMSD_WS2020-Introduction.pdf |
Tuesday, 03.11.2020 | 09:30 - 12:00 | Zoom | Lecture 2: Presentation Tips and Project Management Lecture 3: UML | ||
Thursday, 05.11.2020 | 23:59 CEST | Deadline to send project preferences | Seminar Participants | To: All tutors | |
Monday, 16.11.2020 | 09:00 - 12:00 | Zoom | Requirements Presentation | Seminar Participants | Order of presentations by project id: 19, 12, 01, 02, 03, ..., 21. |
Monday, 23.11.2020 | 09:00 - 10:00 (updated time) | Zoom | Lecture 4: Documentation, Tests, Design Patterns & Integration Strategy | Ardit Ramadani | |
Monday, 14.12.2020 | 09:00 - 12:00 | Zoom | Intermediate Presentations Part I | Seminar Participants | Project ID from 1 to 11 |
Tuesday, 15.12.2020 | 09:00 - 12:00 | Zoom | Intermediate Presentations Part II | Seminar Participants | Project ID from 12 to 21 |
Monday, 08.02.2021 | 09:00 - 12:00 | Zoom | Final Presentations Part I | Seminar Participants | Project ID from 1 to 11 |
Tuesday, 09.02.2021 | 09:00 - 12:00 | Zoom | Final Presentations Part II | Seminar Participants | Project ID from 12 to 21 |
Available Projects
Projects will be announced in due time and presented during the Introductory meeting. Please communicate a selection of 3 choices, each with an explanation (ca. 5 sentences) for why you want to work on this project and how you meet the requirements specified in the project proposal. Use the Student Application Template provided in the Download section.
ID | Title | Supervisor | Student | |
---|---|---|---|---|
1 | 3D reconstruction from 2D x-ray images | Fryderyk | Bui_Ramadani_3D-reconstruction-from-2D-x-ray.pdf | |
2 | Deep Learning Cluster Statistics Back-end | Abdullah | ||
3 | Deep Learning Cluster Statistics Website | Anna | Czempiel_Azampour_ClusterStat-Website.pdf | |
4 | 2D guidance information | Javier Esteban | Marije | Esteban_2D-reduced-visualization.pdf |
5 | Depth estimation on RGB laparoscopic images | Javier Esteban | Andrea* | Esteban_Depth_estimation.pdf |
6 | RGBD SLAM and Point Cloud Registration for spinal surgeries | Javier Esteban | Nijat | Esteban_SLAM-Registration-for-spine.pdf |
7 | Anatomical landmark based loss functions for intensity-based X-ray to CT registration | Matthias Grimm | Marcel | Grim_Intensity-based-x-ray-to-ct-registration.pdf |
8 | Analyzing and fixing a 3D Mesh | Mahdi Hamad | Hamad_Analyzing-and-fixing-3D-mesh .pdf | |
9 | From ORBSLAM3 to Dense Reconstruction | Mahdi Hamad | Muhammed | Hamad_ORBSLAM3-to-dense-reconstruction.pdf |
10 | App development for optimized medical image annotation | Marija* | Hinterwimmer_Wilhelm_App-development-for-optimized-medical-image-annotation.pdf | |
11 | Osseointegration Structures | Franz Bauer | Paula | Kumovis_Osseointegration-structures .pdf |
12 | Virtual Reality Methods for Surgical Guidance | Sasan Matinfar | Beril | Matinfar_Virtual-reality-methods-for-surgical-guidance.pdf |
13 | Image-guided Robotic Microsurgery | Matinfar_Zhou_Image-guided-Robotic-Microsurgery.pdf | ||
14 | Come Fly with me: Design of VR Flying Simulation for Real Flying Humans and Investigation of its Potential use to Assess Balance Disorders | Dr. Daniel Roth | Svenja | Roth_Come-fly-with-me.pdf |
15 | Embodied Hand Prosthesis Learning Using VR | Dr. Daniel Roth | Roth_Embodied-Hand-Prosthesis-Learning-Using-VR.pdf | |
16 | Optimized 3D Point Cloud Reconstruction for Distributed Medical Teleconsultation Systems | Dr. Daniel Roth | Roth_Optimized-3D-Point-Cloud-Reconstruction-for-Distributed-Medical-Teleconsultation-Systems.pdf | |
17 | A nutrition logger for professional athletes | Dr. Claudia Osterkamp-Baerens | Michaela Elijon | Topathleat_Nutrition_logger_for_professional_athletes (two-students).pdf |
18 | Deep learning based cardiac anatomy polygon mesh generation | Begoña | Virtonomy_DL-cardiack-polygon-mesh-generation.pdf | |
19 | Statistical Shape Modeling of Cardiac Anatomy | Moritz Ching-En | Virtonomy_Statistical_Shape_Model_Cardiac.pdf | |
20 | Automatic 3D Segmentation of Bronchial Tree for disease prognosis of CoViD-19 patients | Michele | Wendler_Bukas_Automatic-3D-segmentation.pdf | |
21 | Simulation of UV-Light Irradiation for Room Disinfection (incl. CoViD-19) | Dr. Johannes Oberreuter | John | Wendler_Simulation-UV-Light-Irradiation-for-Room-Disinfection.pdf |
Students
ID | Name | ID | Name | ID | Name | ID | Name |
---|---|---|---|---|---|---|---|
1 | Paula | 6 | Michele | 11 | Marcel | 16 | Begoña |
2 | Marije | 7 | Abdullah | 12 | Fryderyk | 17 | Serif Erkam* |
3 | Muhammed | 8 | Nijat | 13 | Ching-En | 18 | Anna |
4 | Andrea* | 9 | Moritz | 14 | Svenja | 19 | Beril |
5 | Michaela | 10 | Marija* | 15 | Elijon | 20 | John |
Prerequisites and Registration
This course requires basic knowledge of C++ or similar OO programming language. The concepts of OO programming and other concepts as conducted in the Introduction to Computer Science lecture are assumed.
Registration through the TUM Matching System is mandatory. Your chances to be assigned to the course increase if you give the course a higher rank in your choices. If you already have a potential project, notify the course tutors via e-mail as soon as possible. This increases your chances to be assigned to the course, but you have to register through the matching system in any case. For further details about how the matching system works and its schedule please check the documentation.
Project Proposals
In this lab course, students work on clinical software projects and find solutions for problems in the field of medical applications. The student's workload should be around 10-14 hours per week for a period of 3 - 4 months on the assigned project (10 ECTS course).
Each project is expected to have one contact person (supervisor) who should be available for regular updates or if the student needs any help. In addition, the supervisors are kindly invited to participate in the student presentations (Requirements, Intermediate, Final) taking place at the CAMP chair. Each project supervisor will decide on 50% of the grade based on the student’s performance in the project. The other 50% will be decided upon by lecturers, based on the quality of project management and presentation skills of the student.
The project proposal should give a short introduction into the context and describe the most important aspects and expected outcome of the project. Furthermore it should clearly state the required (and optional) skills (programming language, experience with certain libraries etc.).
If you have a suitable project, preferably with a clinical or industrial partner, you are kindly invited to fill out the project proposal template and send it to the course tutors. The deadline for proposal submission is beginning of the lecture period for the Winter Semester 2020.
Preliminary Meeting
When: 17.07.2020 - 13:00-14:00
Where: Zoom
Details:
Topic: PMSD Winter Semester 2020 Preliminary Meeting
Time: Jul 17, 2020 01:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna
Downloads
* TUM Informatics Student Code of Conduct
* CAMP presentation slides for PowerPoint: CAMPmaster.ppt
* CAMP presentation slides for Latex
* Student project application template
* Supervisor project proposal template
Literature and Resources
Github
With your TUM account you can use the LRZ Gitlab